Rapfohl09: the color at the end will be the same amber. I've read that if you aply the colour, sand a little and re-stain again you rise the figure in the wood. I've never tried before so... We'll see.
Aggie Treed: I'm not going to do all the stain before the neck pocket it's done, but while I was cutting the neck angle (I thought this was is easier for me that make the angle in the pocket) I do the first stain. After this I'm going to sand back the stain, prepare the pocket, glue the neck and stain all the guitar.