"...we all know wood doesn't have an effect on tone..."  
Aren't you overstating that a bit?  A lot of us, including the people at Warmoth, think exactly the opposite -- the choice of wood can have a substantial impact on the tone. 
There is room for different opinions, of course.  If you don't think the choice of body wood will make a difference in the tone, I'm not going to try to convince you otherwise, but I'd avoid the blanket statements.