Jared, all of the parts are 'good' and lots of different pickups sound 'good'. The problem is that 'good' is just a subjective term - all of us on here like to play different kinds of music from country to death metal. A Floyd Rose is 'good' if you play metal and like trems, but it's not 'good' if your favorite guitarist is George Thoroughgood.
I totally agree with godrex - if you don't know what you want to sound like / what to play, you shouldn't get a custom guitar yet. Even Wyliee agrees, and he works for Warmoth!
If I were you, I'd probably look for a good used mexican fender telecaster ("standard" telecaster on craigslist, if you live in a big enough city. They are good for lots of different styles of music, don't have a trem so are easier to deal wtih and keep in tune, cheap to buy and easy to resell, or modify, when you figure out what you really want. Take the savings and spend it on lessons. Good Luck!