Get real, you guys. Warmoth isn't charging $1000 and up for anything with flaws - we're talking about, what, a $300 body with a $200 paint job, right? That AINT big bucks in the custom guitar world and perfect woods are rarer and rarer.
PLENTY of custom builders out there will absolutely guarantee you whatever you want, but you'll pay at least $5000 for the finished product.
These parts are a fantastic bargain, generally, considering their quality. For $500 including paint, no company can have a bunch of skilled workers poring over each body for minute flaws, making judgment calls (will he like this 'character spot' or not?) - it gets an inspection, meets the specs, it's out the door. For the kind of QC and hand-holding some of you guys seem to be expecting, all these parts would cost at least double.
If you're coming here and custom ordering standard parts at standard prices, you're bound to get really great gear at far lower prices than you could get elsewhere. You are NOT guaranteed that Warmoth will read your mind, scour their woodshed, and make your dreams come true (though that did happen with my second W, it's not a given).