Two necks for me, both perfect.
My Tele neck nut had to be slightly filed on a couple of strings, no biggie.
My Soloist neck had to have the Floyd nut slightly shimmed, no biggie.
The reason I say "no biggie" on both of them is because both of those things are part of a proper set-up. Not a workmanship issue. And for most people, those two things wouldn't even have been an issue. My luthier has been working on my guitars for 29 years and knows how I like them and does everything he can to get them there.
People need to remember that we are not buying ready to play guitars. We are building guitars from quality parts. If Warmoth was shipping complete guitars they would be doing these things as part of the set-up and sales process.
Before you even attempt to do the set-up on your new Warmoth, you should string it up and play it for a couple of days, no matter how bad it needs the set-up done. You've got to get it settled in before the set-up is done. If you run out an do a set-up before the guitar has settled in, you'll be thinking you got bad parts once it settles in more and needs another set-up.