Strat finishing help please, neck pocket

[pip_du]

I bought Vintage Modern neck and strat body.
The trouble is the height of the gap between the body top and the bottom of the fretboard like this

.
I compared my Fender American Standard Strat, found Fender joint not so high.
It's I choose wrong?  Have a repair method?
Thanks.

Neck:
Headstock Stratocaster®
Construction Vintage Modern
Orientation Right Handed
Shaft Wood Birdseye Maple
Fingerboard Wood Birdseye Maple
Nut Width 1 11/16"
Back Contour Boatneck
Fretwire 6130
Tuner ream Vintage Style (11/32")
Fret Number 22
Radius 10-16" Compound
Inlays Abalone Face Dots
Nut Install White Corian
Neck Finish Vintage Tint Gloss
Scale 25-1/2"
Wood Quality High Grade
One Piece One Piece

Body:
Model Stratocaster®
Orientation Right handed
Core Wood Alder
Top/Rear Rout Top Rout
Bridge,Trem American Standard Strat® Tremolo
Output Jack Strat® Top Jack Rout
Stud Install Use inserts from bridge on order
Finish Black Gloss
Finish Black Gloss
Scale 25-1/2"
Battery Box None
Wood Pieces One Piece
Pickup Rout, Top Strat®, Strat®, Strat®

 

[Cagey]

That clearance is to allow for the pickguard thickness. I think it's usually around .090" (2.29mm).