Thanks for checking it out! I used the neck pickup (SD 59) of this guitar:
The "amp" on that lead tone is the Alien Surfing patch from the FM3.
The distorted guitars in the choruses are my trusty Les Paul w/ the stock pickups. The cleans in the verses are an old Mexi Strat body with a Warmoth neck and a Bare Knuckle Mother's Milk set. The amps for those came from the FM3 as well, but I don't remember which patches.