It is a recessed rout but the top plate would not sit on the body but more level with the body which I guess is what you meant.
From the prototype picture I have seen, it looks level with the top. Of course, that may vary a little dependent on individual set up.
The body specs I went for are:
Model: Stratocaster®
Orientation: Right handed
Scale: 25-1/2"
Wood: Alder
Rout: Top Rout
Pickup Rout: Strat®, Strat®, Humbucker
Controls: None
Bridge: Tremolo Back Cavity Only
Jack Rout: 7/8" (22mm) Side Jack Hole
Neck Pocket: Strat® Shape
Mounting Holes: Standard 4 Bolt
Contours: Contoured Heel / Tummy Cut / Forearm Contour
F-Holes: None
Battery Box: Single Battery Box
So I will be doing the finish myself. I also have a Q Sawn maple with ebony board, SS6100 neck coming with an LSR prep. Normally I might have gone for 1 5/8" but the LSR is 1 11/16" which should be OK as I have been playing my Les Paul more lately.